Publications

Sáenz JS, Seifert J (2024) Extraction of proteins from microbiome of livestocks.

In Salerno, C. (ed.), Metaproteomics, Methods and Protocols. pp. 49-56. ISBN: 978-1-0716-3909-2. doi: 10.1007/978-1-0716-3910-8.

 

Eichinger J, Tretola M, Seifert J, Brugger D (2024) Review: Interactions between microplastics and the gastrointestinal microbiome.

Italian Journal of Animal Science. 23(1), 1044–1056. doi: 10.1080/1828051X.2024.2377642.

 

Quinger F, Kern J, Bosse A, Seifert J, Rodehutscord M, Siegert W (2024) Effects of carriers for oils in compound feeds on growth  performance, nutrient digestibility, and gut microbiota in broiler chickens.

Poultry Science. 103 (7): 103803. doi: 10.1016/j.psj.2024.103803.

 

Naithani H, Rios-Galicia B, Camarinha Silva A, Seifert J. (2024) Strategies to enhance cultivation of anaerobic bacteria from gastrointestinal tract of chicken.

Journal of Visualized Experiments (JOVE). 10:207, e66570, doi: 10.3791/66570.

 

Sarpong N, Seifert J, Bennewitz J, Rodehutscord M, Camarinha-Silva A (2024) Microbial signatures and enterotype clusters in fattening pigs: implications for nitrogen utilization efficiency.

Frontiers in Microbiology.15. doi: 10.3389/fmicb.2024.1354537.

 

Schmid M, Weishaar R, Seifert J, Camarinha-Silva A, Rodehutscord M, Bennewitz J (2024) Genomic analyses of nitrogen utilization efficiency, its indicator trait blood urea nitrogen and the relationship to classical growth performance and feed efficiency traits in a Landrace x Piétrain crossbred population.

Journal of Animal Breeding and Genetics. doi: 10.1111/jbg.12864.

 

Rios-Galicia B, Sáenz JS, Yergaliyev T, Roth C Camarinha-Silva A, Seifert J (2024) Novel taxonomic and functional diversity of eight bacteria from the upper digestive tract of chicken.

International Journal of Systematic and Evolutionary Microbiology. 74(1): 006210. doi: 10.1099/ijsem.0.006210.

 

 

Hau JL, Schleicher L, Herdan S, Simon J, Seifert J, Fritz G, Steuber J (2023) Functionality of the Na+-translocating NADH:quinone oxidoreductase and quinol:fumarate reductase from Prevotella bryantii inferred from homology modeling.

Archives in Microbiology. 206(1):32. doi: 10.1007/s00203-023-03769-5.

 

Dahl S, Seifert J, Camarinha-Silva A, Cheng Y-C, Hernández-Arriaga A, Hudler M, Windisch W, König A (2023) Microbiota and nutrient portraits of European roe deer (Capreolus capreolus) rumen contents in characteristic southern German habitats.

Microbial Ecology. 86(4):3082-3096. doi: 10.1007/s00248-023-02308-5

 

Berghaus D, Haese E, Weishaar R, Sarpong N, Kurz A, Seifert J, Camarinha Silva A, Bennewitz J, Chillon T, Stefanski V, Rodehutscord M (2023) Nitrogen and lysine utilization efficiencies, protein turnover, and blood urea concentrations in crossbred grower pigs at marginal dietary lysine concentration.

Journal of Animal Science. skad335. doi:10.1093/jas/skad335

 

Dahl S, Seifert J, Camarinha-Silva A, Hernández-Arriaga A, Windisch W, König A (2023) “Get the best out of what comes in” – Adaptation of the microbiota of chamois (Rupicapra rupicapra) to seasonal forage availability in the Bavarian Alps.

Frontiers in Microbiology. 14. doi:10.3389/fmicb.2023.1238744

 

Rios Galicia B, Sáenz JS, Yergaliyev T, Camarinha-Silva A, Seifert J (2023) Host specific adaptations of Ligilactobacillus aviarius to poultry.

Current Research in Microbial Sciences. 5. 100199. doi:10.1016/j.crmicr.2023.100199

 

Serrano-Villar S, Tincati C, Raju SC, Sáenz JS, Moreno E, Bargiela R, Cabello A, Sendagorta E, Kurz A, Perez Molina JA, de Benito A, Hov JR, Fernandez-Lopez L, Muriel A, del Campo R, Moreno S, Trøseid M, Seifert J, Ferrer M. (2023) Microbiome-derived cobalamin and succinyl-CoA as biomarkers for improved screening of anal cancer.

Nature Medicine. 29. 1738-1749. doi:10.1038/s41591-023-02407-3

 

Sáenz JS, Rios-Galicia B, Rehkugler B, Seifert J. (2023) Dynamic development of viral and bacterial diversity during grass silage preservation.

Viruses. 15(4). 951. doi: 10.3390/v15040951

 

Lazzari G, Münger A, Eggerschwiler L, Borda-Molina D, Seifert J, Camarinha-Silva A, Schrade S, Zähner M, Zeyer K, Kreuzer M, Dohme-Meier F. (2023) Effects of Acacia mearnsii added to silages differing in nutrient composition and condensed tannins on ruminal and manure-derived methane emissions of dairy cows.

Journal of Dairy Science. 106(9). doi: 10.3168/jds.2022-22901

 

Amin N, Schwarzkopf S, Tröscher-Mußotter J, Camarinha-Silva A, Dänicke S, Huber K, Frahm J, Seifert J. (2023) Host metabolome and faecal microbiome shows potential interactions impacted by age and weaning times in calves.

Animal Microbiome. 5. 12. doi: 10.1186/s42523-023-00233-z

 

Lazzari G, Münger A, Heimo D, Seifert J, Camarinha-Silva A, Borda-Molina D, Zähner M, Schrade S, Kreuzer M, Dohme-Meier F. (2023) Effects of tanniferous sainfoin and Acacia mearnsii extract on urinary N excretion and ammonia volatilization from the slurry of dairy cows.

Animal Feed Science and Technology. 297. 115577. doi: 10.1016/j.anifeedsci.2023.115577

Trautmann A, Schleicher L, Koch A, Günther J, Steuber J, Seifert J. (2022) A shift towards succinate-producing Prevotella in the ruminal microbiome challenged with monensin.

Proteomics. e2200121. doi: 10.1002/pmic.202200121

 

Tröscher-Mußotter J, Deusch S, Borda-Molina D, Frahm J, Dänicke S, Camarinha-Silva A, Huber K, Seifert J (2022) Cow’s microbiome from antepartum to postpartum: A long-term study covering two physiological challenges.

Frontiers in Microbiology 13. doi: 10.3389/fmicb.2022.1000750

 

Roth C, Sims T, Rodehutscord M, Seifert J, Camarinha-Silva A. (2022) The active core microbiota of two high-yielding laying hen breeds fed with different levels of calcium and phosphorus.

Frontiers in Physiology 13. doi:10.3389/fphys.2022.951350.

 

Röhm K, Gonzalez-Uarquin F, Harmel RK, Trung MN, Diener M, Fiedler D, Huber K, Seifert J. (2022) Investigation of a potential electrogenic transport-system for myo-inositol in the small intestine of laying hens.

British Poultry Science 63:91-97; doi.10.1080/00071668.2021.1958301

Van Den Bossche T, Arntzen MØ, Becher D, Benndorf D; Eijsink VGH; Henry C, Jagtap PD, Jehmlich N, Juste C, Kunath BJ, Mesuere B, Muth T, Pope PB, Seifert J, Tanca A, Uzzau S, WilmesP, Hettich R, Armengaud J (2021) The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes.

Microbiome 9(1):243. doi.org/10.1186/s40168-021-01176-w

 

Kurz A, Seifert J. (2021) Factors influencing proteolysis and protein utilization in the intesine of pigs: a review.

Animals 11(12):3551. doi.org/10.3390/ani11123551.

 

Schleicher L, Herdan S, Fritz G, Trautmann A, Seifert J, Steuber J. (2021) Central carbon metabolism, sodium-motive electron transfer and ammonium formation by the vaginal pathogen Prevotella bivia.

International Journal of Molecular Sciences 22: 11925; doi.org/10.3390/ijms222111925

 

Tröscher-Mußotter J, Saenz JS, Grindler S, Meyer J, Kononov SU, Mezger B, Borda-Molina D, Frahm J, Dänicke S, Camarinha-Silva A, Huber K, Seifert J (2021) Microbiome clusters disclose physiologic variances in dairy cows challenged by calving and lipopolysaccharides.

mSystems 6(5): e00856-21 doi.org/10.1128/mSystems.00856-21

 

Trautmann A, Schleicher L, Pfirrmann J, Boldt C, Steuber J, Seifert J (2021) Na+-coupled respiration and reshaping of extracellular polysaccharide layer counteract monensin-induced cation permeability in Prevotella bryantii B14.

International Journal of Molecular Sciences 22: 10202; doi.10.3390/ijms221910202.

 

Schleicher L, Trautmann A, Stegmann D, Fritz G, Gätgens J, Bott M, Hein S, Simon J, Seifert J, Steuber J (2021) A sodium-translocating module linking succinate production to formation of a membrane potential in Prevotella bryantii

Applied and Environmental Microbiology; 87(21):e0121121
doi.org/10.1128/AEM.01211-21.

 

Saenz JS, Kurz A, Ruczizka U, Bünger M, Dippel M, Nagl V, Grenier B, Ladinig A, Seifert J, Selberherr E. (2021) Metaproteomics reveals alteration of the gut microbiome in weaned piglets due to the ingestion of the mycotoxins deoxynivalenol and zearalenone.

Toxins 13(8):583; doi.org/10.3390/toxins13080583.

 

Röhm K, Diener M, Huber K, Seifert J (2021) Characterization of the cecal smooth muscle contraction in laying hens.

Veterinary Sciences. 8(6), 91; doi.org/10.3390/vetsci8060091

 

Amin N, Schwarzkopf S, Kinoshita A, Tröscher-Mußotter J, Dänicke S, Camarinha-Silva A, Huber K, Frahm J, Seifert J (2021) Evolution of rumen and oral microbiota in calves is influenced by age and time of weaning.


Animal Microbiome 3:31; doi.org/10.1186/s42523-021-00095-3

 

Borda-Molina D, Iffland H, Schmid M, Müller R, Schad S, Seifert J, Tetens J, Bessei W, Bennewitz J, Camarinha-Silva A (2021) Gut microbial composition and predicted functions are not associated with feather pecking and antagonistic behavior in laying hens.

Life 11(3), 235; doi.org/10.3390/life11030235

 

Amin N, Seifert J (2021) Dynamic progression of the calf’s microbiome and its influence on host health.

Computational and Structural Biotechnology Journal 19, 989-1001; doi.org/10.1016/j.csbj.2021.01.035

 

Meyer J, Kononov SU, Grindler S, Tröscher-Mußotter J, Alaedin MT, Frahm J, Hüther L, Kluess J, Kersten S, von Soosten D, Meyer U, Most E, Eder K, Sauerwein H, Seifert J, Huber K, Wegerich A, Rehage J, Dänicke S (2021) Dietary L-carnitine supplementation modifies the lipopolysaccharide-induced acute phase reaction in dairy cows.

Animals 11, 136; doi.org/10.3390/ani11010136

 

Borda-Molina D, Mátis G, Mackei M, Neogrády Z, Huber K, Seifert J, Camarinha-Silva A (2021) Caeca microbial variation in broiler chickens as a result of dietary   combinations using two cereal types, supplementation of crude protein and sodium butyrate.

Frontiers in Microbiology. 11, 617800; doi:10.3389/fmicb.2020.617800

 

Deusch S, Seifert J Metaproteomics in Nutrition.

In: Cifuentes, A. (Ed.), Comprehensive Foodomics, vol. 1. Elsevier, pp. 730–741.         ISBN: 9780128163955

 

 

 


 

 

Trautmann A, Schleicher L, Deusch S, Gätgens J, Steuber J, Seifert J (2020) Short-chain fatty acids modulate metabolic pathways and membrane lipids in Prevotella bryantii B14.

Proteomes. 8, 28; doi:10.3390/proteomes8040028

 

Zeitschriftenbeitrag (peer-reviewed)
Sommerfeld V, Omolade Omotoso A, Oster M, Reyer H, Camarinha-Silva A, Hasselmann M, Huber K, Ponsuksili S, Seifert J, Stefanski V, Wimmers K, Rodehutscord M (2020) Phytate degradation, transcellular mineral transporters, and mineral utilization by two strains of laying hens as affected by dietary phosphorus and calcium.

Animals 10, 1736; doi:10.3390/ani10101736

 

Zeitschriftenbeitrag (peer-reviewed)
Sommerfeld V, Huber K, Bennewitz J, Camarinha-Silva A, Hasselmann M, Ponsuksili S, Seifert J, Stefanski V, Wimmers K, Rodehutscord M (2020) Phytate degradation, myo-inositol release, and utilization of phosphorus and calcium by two strains of laying hens in five production periods.

Poultry Science doi.org/10.1016/j.psj.2020.08.064

 

Zeitschriftenbeitrag (peer-reviewed)

Meyer J, Daniels SU, Grindler S, Tröscher-Mußotter J, Alaedin MT, Frahm J, Hüther L, Kluess J, Kersten S, von Soosten D, Meyer U, Most E, Eder K, Sauerwein H, Seifert J, Huber K, Rehage J, Dänicke S (2020) Effects of a dietary L-carnitine supplementation for dairy cows on performance, energy metabolism and recovery from calving.

Animals 10(2), 342; doi.org/10.3390/ani10020342

 

Zeitschriftenbeitrag (peer-reviewed)

Rosenfelder-Kuon P, Klein N, Zegowitz G, Thuringer L, Schollenberger M, Kühn I, Seifert J, Rodehutscord M (2020) Phytate degradation cascade in pigs as affected by phytase supplementation and rapeseed cake inclusion in corn-soybean meal-based diets.              

Journal of Animal Science Feb 15. pii: skaa053. doi: 10.1093/jas/skaa053

 

Zeitschriftenbeitrag (peer-reviewed)

Schleicher L, Fritz G, Seifert J, Steuber J (2020) Anoxic cell rupture of Prevotella bryantii by high-pressure homogenization protects the Na+-translocating NADH:quinone oxidoreductase from oxidative damage.


Archives of Microbiology, doi:10.1007/s00203-019-01805-x

Zeitschriftenbeitrag (peer-reviewed)

Seifert J, Tilocca B (2019) Omics technologies for connecting host responses with poultry gut function. In: Improving gut health in poultry. S.C.Ricke (eds). Burleigh Dodds Science Publishing.

ISBN-13: 9781786763044

Buchbeitrag

Deusch S, Bok E, Schleicher L, Seifert J, Steuber J (2019) Occurrence and function of the Na+-translocating NADH:Quinone oxidoreductase in Prevotella spp.

Microorganisms 7(5), 117, doi.org/10.3390/microorganisms7050117

Zeitschriftenbeitrag (peer-reviewed)

Ziganshin AM, Wintsche B, Seifert J, Carstensen M, Born J, Kleinsteuber S (2019) Spatial separation of metabolic stages in a tube anaerobic baffled reactor: Reactor performance and microbial community dynamics.

Applied Microbiology and Biotechnology 103(9), 3915-3929, doi: 10.1007/s00253-019-09767-2
Zeitschriftenbeitrag (peer-reviewed)

Pankoke H, Maus I, Loh G, Hüser A, Seifert J, Tilker A, Hark S, Scyrba A, Pelzer S, Kleinbölting J (2019) Evaluation of commercially available DNA extraction kits for the analysis of the broiler chicken cecal microbiota.

FEMS Microbiol. Letters, doi: 10.1093/femsle/fnz033.

Zeitschriftenbeitrag (peer-reviewed)

Heyer CME, Schmucker S, Burbach K, Weiss E,  Eklund M, Aumiller T, Capezzone F, Steuber J, Rodehutscord M, Hoelzle LE, Seifert J, Mosenthin R, Stefanski V (2019) Phytate degradation, intestinal microbiota, microbial metabolites, and immune values are changed in growing pigs fed diets with varying calcium-phosphorus concentration and fermentable substrates.

Journal of Animal Physiology and Animal Nutrition. 103(4):1185-1197,
doi.org/10.1111/jpn.13088

Zeitschriftenbeitrag (peer-reviewed)

Seifert J, Muth T (2019) Editorial for Special Issue: Metaproteomics.

Proteomes. 7(1), 9, doi:10.3390/proteomes7010009

 

Zeitschriftenbeitrag (peer-reviewed)

Tröscher-Mußotter J, Tilocca B, Stefanski V, Seifert J (2019) Analysis of the bacterial and host proteins along and across the porcine gastrointestinal tract.

Proteomes. 7(1), 4; doi:10.3390/proteomes7010004

Zeitschriftenbeitrag (peer-reviewed)
Heinritz SN, Weiss E, Seifert J, Mosenthin R, Kuß S, Degenhardt AG, Koch TJ. (2018): Effect of cellobiose supplementation on in vitro fermentation activity and bacterial numbers of porcine inocula.
In: Journal of Animal Physiology and Animal Nutrition. Band 102,  Seiten 474-482.
DOI: https://doi.org/10.1111/jpn.12770
Zeitschriftenbeitrag (peer-reviewed)
Zecchin S, Mueller RC, Seifert J, Stingl U, Anantharaman K, von Bergen M, Cavalca L, Pester M: (2018): Rice paddy nitrospirae carry and express genes related to sulfate respiration: Proposal of the new genus ”Candidatus Sulfobium”.
In: Applied and Environmental Microbiology. Band 84, Heft 5, Seiten e02224-17.
DOI: https://doi.org/10.1128/AEM.02224-17
Zeitschriftenbeitrag (peer-reviewed)
Borda-Molina D, Seifert J and Camarinha-Silva A (2018): Current perspectives of the chicken gastrointestinal tract and its microbiome.
In: Computational and Structural Biotechnology Journal. Band 16, Seiten 131-139.
DOI: https://doi.org/10.1016/j.csbj.2018.03.002
Zeitschriftenbeitrag (peer-reviewed)

Deusch S, Serrano-Villar S, Rojo D, Martínez-Martínez M, Bargiela R, Vázquez-Castellanos JF, Sainz T, Barbas C, Moya A, Moreno S, Gosalbes MJ, Estrada V, Seifert J and Ferrer M (2018): Effects of HIV, antiretroviral therapy and prebiotics on the active fraction of the gut microbiota.
In: AIDS. Band 32, Heft 10, Seiten 1229-1237.
DOI: https://doi.org/10.1097/QAD.0000000000001831
ISBN: 0269-9370

Zeitschriftenbeitrag (peer-reviewed)
Oberbach A, Haange SB, Schlichting N, Heinrich M, Lehmann S, Till H, Hugenholtz F, Kullnick Y, Smidt H, Frank K, Seifert J, Jehmlich N, von Bergen M (2017): Metabolic in vivo labelling highlights differences of metabolically active microbes from the mucosal gastrointestinal microbiome between high fat and normal chow diet.
In: Journal of Proteome Research. Band 16, 4, Seiten 1593-1604.
Zeitschriftenbeitrag (peer-reviewed)
Kaewtapee C, Burbach K, Tomforde G, Hartinger T, Camarinha-Silva A, Heinritz S, Seifert J, Wiltafsky M, Mosenthin R and Rosenfelder-Kuon P: (2017): Effect of Bacillus subtilis and Bacillus licheniformis supplementation in diets with low- and high-protein content on ileal crude protein and amino acid digestibility and intestinal microbiota composition of growing pigs.
In: Journal of Animal Science and Biotechnology. Band 8:37, Seiten 15 p.
Zeitschriftenbeitrag (peer-reviewed)
Deusch S, Camarinha-Silva A, Conrad J, Beifuss U, Rodehutscord M and Seifert J (2017): A structural and functional elucidation of the rumen microbiome influenced by various diets and microenvironments.
In: Frontiers in Microbiology. Band 8, Seiten Artikel 1605.
Zeitschriftenbeitrag (peer-reviewed)
Burbach K, Strang EJP, Mosenthin R, Camarinha-Silva A and Seifert J: (2017): Porcine intestinal microbiota is shaped by diet composition based on rye or triticale.
In: Journal of Applied Microbiology. Band 123, Seiten 1571-1583.
Zeitschriftenbeitrag (peer-reviewed)
Tilocca B, Burbach K, Heyer CME, Hoelzle LE, Mosenthin R, Stefanski V, Camarinha-Silva A and Seifert J: (2017): Dietary changes in nutritional studies shape the structural and functional composition of the pigs’ fecal microbiome - from days to weeks.
In: Microbiome. Band 5:144.
Zeitschriftenbeitrag (peer-reviewed)
Burbach K, Seifert J, Pieper DH, Camarinha-Silva A (2016): Evaluation of DNA extraction kits and phylogenetic diversity of the porcine gastrointestinal tract based on Illumina sequencing of two hypervariable regions.
In: MicrobiologyOpen. Band 5, 1, Seiten 70-82.
Zeitschriftenbeitrag (peer-reviewed)
Starke R, Kermer R, Ullmann-Zeunert L, Baldwin I, Seifert J, Bastida F, von Bergen M, Jehmlich N (2016): Bacteria dominate the short-term assimilation of plant-derived N in soil.
In: Soil Biology & Biochemistry. Band 96, Seiten 30-38.
Zeitschriftenbeitrag (peer-reviewed)
Starke R, Keller A, Jehmlich N, Vogt C, Richnow HH, Kleinsteuber S, von Bergen M, Seifert J. (2016): Pulsed 13C2-acetate protein-SIP unveils Epsilonproteobacteria as dominant acetate utilizers in a sulfate-reducing microbial community mineralizing benzene.
In: Microbial Ecology. Band 71, Seiten 901-911.
Zeitschriftenbeitrag (peer-reviewed)
Herbst FA, Lünsmann V, Kjeldal H, Jehmlich N, Tholey A, von Bergen M, Nielsen JL, Hettich RL, Seifert J, Nielsen PH (2016): Enhancing Metaproteomics - The value of models and defined environmental microbial systems.
In: Proteomics. Band 16, 5, Seiten 783-798.
Zeitschriftenbeitrag (peer-reviewed)
Rabus R, Boll M, Heider J, Meckenstock RU, Buckel W, Einsle O, Ermler U, Golding BT, Gunsalus RP, Kroneck PM, Krüger M, Lueders T, Martins BM, Musat F, Richnow HH, Schink B, Seifert J, Szaleniec M, Treude T, Ullmann GM, Vogt C, von Bergen M, Wilkes H (2016): Anaerobic microbial degradation of hydrocarbons: from enzymatic reactions to the environment.
In: Journal of Molecular Microbiology and Biotechnology. Band 26, 1-3, Seiten 5-28.
Zeitschriftenbeitrag (peer-reviewed)
Vogt C, Lueders T, Richnow HH, Krüger M, von Bergen M, Seifert J (2016): Stable isotope probing approaches to study anaerobic hydrocarbon degradation and degraders.
In: Journal of Molecular Microbiology and Biotechnology. Band 26, 1-3, Seiten 195-210.
Zeitschriftenbeitrag (peer-reviewed)
Schiffmann CL, Otto W, Hansen R, Nielsen PH, Adrian L, Seifert J, von Bergen M, Jehmlich N (2016): Proteomic dataset of the organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 grown on hexachlorobenzene as electron acceptor.
In: Data in Brief. Band 22, 7, Seiten 253-256.
Zeitschriftenbeitrag (peer-reviewed)
Heinritz SN, Weiss E, Eklund M, Aumiller T, Louis S, Rings A, Messner S, Camarinha-Silva A, Seifert J, Bischoff SC, Mosenthin R (2016): Intestinal microbiota and microbial metabolites are changed in a pig model fed a high-fat/low-fiber or a low-fat/high-fiber diet.
In: PloS ONE. Band 11(4):e0154329, Seiten 21 S.
Zeitschriftenbeitrag (peer-reviewed)
Serrano-Villar S, Rojo D, Martínez-Martínez M, Deusch S, Vázquez-Castellanos JF, Bargiela R, Sainz T, Vera M, Moreno S, Estrada V, Gosalbes MJ, Latorre A, Seifert J, Barbas C, Moya A, Ferrer M (2016): Gut bacteria metabolism impacts immune recovery in HIV-infected individuals.
In: eBioMedicine. Band 8, Seiten 203-216.
Zeitschriftenbeitrag (peer-reviewed)
Serrano-Villar S, Rojo D, Martínez-Martínez M, Deusch S, Vázquez-Castellanos JF, Sainz T, Vera M, Moreno S, Estrada V, Gosalbes MJ, Latorre A, Seifert J, Barbas C, Moya A, Ferrer M (2016): HIV infection results in metabolic alterations in the gut microbiota different than those induced by other diseases.
In: Scientific Reports. Band 6, Seiten 26192.
Zeitschriftenbeitrag (peer-reviewed)
Tilocca B, Witzig M, Rodehutscord M, Seifert J (2016): Variations of Phosphorous Accessibility Causing Changes in Microbiome Functions in the Gastrointestinal Tract of Chickens.
In: PlosOne. Band 11(10), Seiten e0164735.
Zeitschriftenbeitrag (peer-reviewed)
Heyer CME, Schmucker S, Aumiller T, Föll A, Uken K, Rodehutscord M, Hoelzle LE, Seifert J, Stefanski V, Mosenthin R, Eklund M, and Weiss E. (2016): The impact of dietary phosphorus and calcium on the intestinal microbiota and mitogen-induced proliferation of mesenteric lymph node lymphocytes in pigs.
In: Journal of Animal Science. Band 94 - Suppl. 3, Seiten 373-376.
Zeitschriftenbeitrag (peer-reviewed)
Seifert J (2016): Gesunde Tiere durch die „richtigen Mikroorganismen”.
In: BLE. Schriftenreihe Agrobiodiversität. Band 99, Seiten 120-128.
Buchbeitrag
Deusch S, Tilocca B, Camarinha-Silva A, Seifert J (2015): News in livestock research — use of Omics-technologies to study the microbiota in the gastrointestinal tract of farm animals.
In: Computational and Structural Biotechnology Journal. Band 13, Seiten 55-63.
Zeitschriftenbeitrag (peer-reviewed)
Pöritz M, Schiffmann CL, Hause G, Heinemann U, Seifert J, Jehmlich N, von Bergen M, Nijenhuis I, Lechner U (2015): Dehalococcoides mccartyi strain DCMB5 respires a broad spectrum of chlorinated aromatic compounds.
In: Applied and Environmental Microbiology. Band 81, 2, Seiten 587-596.
Zeitschriftenbeitrag (peer-reviewed)
Sachsenberg T, Herbst FA, Taubert M, Kermer R, Jehmlich N, von Bergen M, Seifert J, Kohlbacher O. (2015): MetaProSIP: Automated Inference of Stable Isotope Incorporation Rates in Proteins for Functional Metaproteomics.
In: Journal of Proteome Research. Band 14, 2, Seiten 619-627.
Zeitschriftenbeitrag (peer-reviewed)
Deusch S., Seifert, J. (2015): Catching the tip of the iceberg - evaluation of sample preparation protocols for metaproteomic studies of the rumen microbiota.
In: Proteomics. Band 15, 20, Seiten 3590-3595.
Zeitschriftenbeitrag (peer-reviewed)
Kümmel S, Herbst F-A, Bahr A, Duarte M, Pieper DH, Jehmlich N, Seifert J, von Bergen M, Bombach P, Richnow HH and Vogt C. (2015): Anaerobic naphthalene degradation by sulfate-reducing Desulfobacteraceae from various anoxic aquifers.
In: FEMS Microbiology Ecology. Band 91, Seiten Advance access.
Zeitschriftenbeitrag (peer-reviewed)
Tobalina L, Bargiela R, Pey J, Herbst FA, Lores I, Rojo D, Barbas C, Peláez AI, Sánchez J, von Bergen M, Seifert J, Ferrer M, Planes FJ (2015): Context-specific metabolic network reconstruction of a naphthalene degrading bacterial community guided by metaproteomic data.
In: Bioinformatics. Band 31, Seiten 1771-1779.
Zeitschriftenbeitrag (peer-reviewed)
Witzig M, Boguhn J, Zeder M, Seifert J and Rodehutscord M. (2015): Effect of donor animal species and their feeding on the composition of the microbial community establishing in a rumen simulation.
In: Journal of Applied Microbiology. Band 119, Seiten 33-46.
Zeitschriftenbeitrag (peer-reviewed)
Bargiela R, Herbst FA, Martínez-Martínez M, Seifert J, Rojo D, Cappello S, Genovese M, Crisafi F, Denaro R, Chernikova TN, Barbas C, von Bergen M, Yakimov MM, Ferrer M, Golyshin PN (2015): Metaproteomics and metabolomics analyses of three chronically petroleum-polluted sites reveal the importance of general anaerobic processes uncoupled with degradation.
In: Proteomics. Band 15, 20, Seiten 3508-3520.
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Goris T, Schiffmann CL, Gadkari J, Schubert T, Seifert J, Jehmlich N, von Bergen M, Diekert G (2015): Proteomics of the organohalide-respiring epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates.
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Witzig M, Camarinha da Silva A, Green-Engert R, Hoelzle K, Zeller E, Seifert J, Hoelzle LE and Rodehutscord M (2015): Spatial variation of the gut microbiota in Broiler chickens as affected by dietary available phosphorus and assessed by T-RFLP analysis and 454 pyrosequencing.
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Bozinovski D, Taubert M, Kleinsteuber S, Richnow H-H, von Bergen M, Vogt C, Seifert J (2014): Metaproteogenomic analysis of a sulfate-reducing enrichment culture reveals genomic organization of key enzymes in the m-xylene degradation pathway and metabolic activity of proteobacteria.
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Lieder S, Jahn M, Seifert J, von Bergen M, Müller S and Takors R (2014): Subpopulation-proteomics reveal growth rate, but not cell cycling, as a major impact on protein composition in Pseudomonas putida KT2440.
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Marozava S, Röling WFM, Seifert J, Küffner R, von Bergen M and Meckenstock RU (2014): Physiology of Geobacter metallireducens under excess and limitation of electron donors. Part I. Batch cultivation with excess of carbon sources.
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Schiffmann CL, Jehmlich N, Otto W, Hansen R, Halkjær Nielsen P, Adrian L, Seifert J and von Bergen M. (2014): Proteome profile and proteogenomics of the organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 grown on hexachlorobenzene as electron acceptor.
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