Trautmann A, Schleicher L, Deusch S, Gätgens J, Steuber J, Seifert J (2020) Short-chain fatty acids modulate metabolic pathways and membrane lipids in Prevotella bryantii B14.
Proteomes. 8, 28; doi:10.3390/proteomes8040028
| Zeitschriftenbeitrag (peer-reviewed) |
| Sommerfeld V, Omolade Omotoso A, Oster M, Reyer H, Camarinha-Silva A, Hasselmann M, Huber K, Ponsuksili S, Seifert J, Stefanski V, Wimmers K, Rodehutscord M (2020) Phytate degradation, transcellular mineral transporters, and mineral utilization by two strains of laying hens as affected by dietary phosphorus and calcium. Animals 10, 1736; doi:10.3390/ani10101736
| Zeitschriftenbeitrag (peer-reviewed) |
| Sommerfeld V, Huber K, Bennewitz J, Camarinha-Silva A, Hasselmann M, Ponsuksili S, Seifert J, Stefanski V, Wimmers K, Rodehutscord M (2020) Phytate degradation, myo-inositol release, and utilization of phosphorus and calcium by two strains of laying hens in five production periods. Poultry Science doi.org/10.1016/j.psj.2020.08.064
| Zeitschriftenbeitrag (peer-reviewed) |
Meyer J, Daniels SU, Grindler S, Tröscher-Mußotter J, Alaedin MT, Frahm J, Hüther L, Kluess J, Kersten S, von Soosten D, Meyer U, Most E, Eder K, Sauerwein H, Seifert J, Huber K, Rehage J, Dänicke S (2020) Effects of a dietary L-carnitine supplementation for dairy cows on performance, energy metabolism and recovery from calving.
Animals 10(2), 342; doi.org/10.3390/ani10020342
| Zeitschriftenbeitrag (peer-reviewed) |
Rosenfelder-Kuon P, Klein N, Zegowitz G, Thuringer L, Schollenberger M, Kühn I, Seifert J, Rodehutscord M (2020) Phytate degradation cascade in pigs as affected by phytase supplementation and rapeseed cake inclusion in corn-soybean meal-based diets. Journal of Animal Science Feb 15. pii: skaa053. doi: 10.1093/jas/skaa053
| Zeitschriftenbeitrag (peer-reviewed) |
Schleicher L, Fritz G, Seifert J, Steuber J (2020) Anoxic cell rupture of Prevotella bryantii by high-pressure homogenization protects the Na+-translocating NADH:quinone oxidoreductase from oxidative damage.
| Zeitschriftenbeitrag (peer-reviewed) |
Seifert J, Tilocca B (2019) Omics technologies for connecting host responses with poultry gut function. In: Improving gut health in poultry. S.C.Ricke (eds). Burleigh Dodds Science Publishing.
| Buchbeitrag |
Deusch S, Bok E, Schleicher L, Seifert J, Steuber J (2019) Occurrence and function of the Na+-translocating NADH:Quinone oxidoreductase in Prevotella spp. Microorganisms 7(5), 117, doi.org/10.3390/microorganisms7050117 | Zeitschriftenbeitrag (peer-reviewed) |
| Ziganshin AM, Wintsche B, Seifert J, Carstensen M, Born J, Kleinsteuber S (2019) Spatial separation of metabolic stages in a tube anaerobic baffled reactor: Reactor performance and microbial community dynamics. Applied Microbiology and Biotechnology 103(9), 3915-3929, doi: 10.1007/s00253-019-09767-2 | Zeitschriftenbeitrag (peer-reviewed) |
Pankoke H, Maus I, Loh G, Hüser A, Seifert J, Tilker A, Hark S, Scyrba A, Pelzer S, Kleinbölting J (2019) Evaluation of commercially available DNA extraction kits for the analysis of the broiler chicken cecal microbiota. FEMS Microbiol. Letters, doi: 10.1093/femsle/fnz033. | Zeitschriftenbeitrag (peer-reviewed) |
Heyer CME, Schmucker S, Burbach K, Weiss E, Eklund M, Aumiller T, Capezzone F, Steuber J, Rodehutscord M, Hoelzle LE, Seifert J, Mosenthin R, Stefanski V (2019) Phytate degradation, intestinal microbiota, microbial metabolites, and immune values are changed in growing pigs fed diets with varying calcium-phosphorus concentration and fermentable substrates. Journal of Animal Physiology and Animal Nutrition. 103(4):1185-1197, | Zeitschriftenbeitrag (peer-reviewed) |
Seifert J, Muth T (2019) Editorial for Special Issue: Metaproteomics. Proteomes. 7(1), 9, doi:10.3390/proteomes7010009
| Zeitschriftenbeitrag (peer-reviewed) |
Tröscher-Mußotter J, Tilocca B, Stefanski V, Seifert J (2019) Analysis of the bacterial and host proteins along and across the porcine gastrointestinal tract. Proteomes. 7(1), 4; doi:10.3390/proteomes7010004 | Zeitschriftenbeitrag (peer-reviewed) |
| Heinritz SN, Weiss E, Seifert J, Mosenthin R, Kuß S, Degenhardt AG, Koch TJ. (2018): Effect of cellobiose supplementation on in vitro fermentation activity and bacterial numbers of porcine inocula. In: Journal of Animal Physiology and Animal Nutrition. Band 102, Seiten 474-482. DOI: https://doi.org/10.1111/jpn.12770 | Zeitschriftenbeitrag (peer-reviewed) |
| Zecchin S, Mueller RC, Seifert J, Stingl U, Anantharaman K, von Bergen M, Cavalca L, Pester M: (2018): Rice paddy nitrospirae carry and express genes related to sulfate respiration: Proposal of the new genus ”Candidatus Sulfobium”. In: Applied and Environmental Microbiology. Band 84, Heft 5, Seiten e02224-17. DOI: https://doi.org/10.1128/AEM.02224-17 | Zeitschriftenbeitrag (peer-reviewed) |
| Borda-Molina D, Seifert J and Camarinha-Silva A (2018): Current perspectives of the chicken gastrointestinal tract and its microbiome. In: Computational and Structural Biotechnology Journal. Band 16, Seiten 131-139. DOI: https://doi.org/10.1016/j.csbj.2018.03.002 | Zeitschriftenbeitrag (peer-reviewed) |
Deusch S, Serrano-Villar S, Rojo D, Martínez-Martínez M, Bargiela R, Vázquez-Castellanos JF, Sainz T, Barbas C, Moya A, Moreno S, Gosalbes MJ, Estrada V, Seifert J and Ferrer M (2018): Effects of HIV, antiretroviral therapy and prebiotics on the active fraction of the gut microbiota. | Zeitschriftenbeitrag (peer-reviewed) |
| Oberbach A, Haange SB, Schlichting N, Heinrich M, Lehmann S, Till H, Hugenholtz F, Kullnick Y, Smidt H, Frank K, Seifert J, Jehmlich N, von Bergen M (2017): Metabolic in vivo labelling highlights differences of metabolically active microbes from the mucosal gastrointestinal microbiome between high fat and normal chow diet. In: Journal of Proteome Research. Band 16, 4, Seiten 1593-1604. | Zeitschriftenbeitrag (peer-reviewed) |
| Kaewtapee C, Burbach K, Tomforde G, Hartinger T, Camarinha-Silva A, Heinritz S, Seifert J, Wiltafsky M, Mosenthin R and Rosenfelder-Kuon P: (2017): Effect of Bacillus subtilis and Bacillus licheniformis supplementation in diets with low- and high-protein content on ileal crude protein and amino acid digestibility and intestinal microbiota composition of growing pigs. In: Journal of Animal Science and Biotechnology. Band 8:37, Seiten 15 p. | Zeitschriftenbeitrag (peer-reviewed) |
| Deusch S, Camarinha-Silva A, Conrad J, Beifuss U, Rodehutscord M and Seifert J (2017): A structural and functional elucidation of the rumen microbiome influenced by various diets and microenvironments. In: Frontiers in Microbiology. Band 8, Seiten Artikel 1605. | Zeitschriftenbeitrag (peer-reviewed) |
| Burbach K, Strang EJP, Mosenthin R, Camarinha-Silva A and Seifert J: (2017): Porcine intestinal microbiota is shaped by diet composition based on rye or triticale. In: Journal of Applied Microbiology. Band 123, Seiten 1571-1583. | Zeitschriftenbeitrag (peer-reviewed) |
| Tilocca B, Burbach K, Heyer CME, Hoelzle LE, Mosenthin R, Stefanski V, Camarinha-Silva A and Seifert J: (2017): Dietary changes in nutritional studies shape the structural and functional composition of the pigs’ fecal microbiome - from days to weeks. In: Microbiome. Band 5:144. | Zeitschriftenbeitrag (peer-reviewed) |
| Burbach K, Seifert J, Pieper DH, Camarinha-Silva A (2016): Evaluation of DNA extraction kits and phylogenetic diversity of the porcine gastrointestinal tract based on Illumina sequencing of two hypervariable regions. In: MicrobiologyOpen. Band 5, 1, Seiten 70-82. | Zeitschriftenbeitrag (peer-reviewed) |
| Starke R, Kermer R, Ullmann-Zeunert L, Baldwin I, Seifert J, Bastida F, von Bergen M, Jehmlich N (2016): Bacteria dominate the short-term assimilation of plant-derived N in soil. In: Soil Biology & Biochemistry. Band 96, Seiten 30-38. | Zeitschriftenbeitrag (peer-reviewed) |
| Starke R, Keller A, Jehmlich N, Vogt C, Richnow HH, Kleinsteuber S, von Bergen M, Seifert J. (2016): Pulsed 13C2-acetate protein-SIP unveils Epsilonproteobacteria as dominant acetate utilizers in a sulfate-reducing microbial community mineralizing benzene. In: Microbial Ecology. Band 71, Seiten 901-911. | Zeitschriftenbeitrag (peer-reviewed) |
| Herbst FA, Lünsmann V, Kjeldal H, Jehmlich N, Tholey A, von Bergen M, Nielsen JL, Hettich RL, Seifert J, Nielsen PH (2016): Enhancing Metaproteomics - The value of models and defined environmental microbial systems. In: Proteomics. Band 16, 5, Seiten 783-798. | Zeitschriftenbeitrag (peer-reviewed) |
| Rabus R, Boll M, Heider J, Meckenstock RU, Buckel W, Einsle O, Ermler U, Golding BT, Gunsalus RP, Kroneck PM, Krüger M, Lueders T, Martins BM, Musat F, Richnow HH, Schink B, Seifert J, Szaleniec M, Treude T, Ullmann GM, Vogt C, von Bergen M, Wilkes H (2016): Anaerobic microbial degradation of hydrocarbons: from enzymatic reactions to the environment. In: Journal of Molecular Microbiology and Biotechnology. Band 26, 1-3, Seiten 5-28. | Zeitschriftenbeitrag (peer-reviewed) |
| Vogt C, Lueders T, Richnow HH, Krüger M, von Bergen M, Seifert J (2016): Stable isotope probing approaches to study anaerobic hydrocarbon degradation and degraders. In: Journal of Molecular Microbiology and Biotechnology. Band 26, 1-3, Seiten 195-210. | Zeitschriftenbeitrag (peer-reviewed) |
| Schiffmann CL, Otto W, Hansen R, Nielsen PH, Adrian L, Seifert J, von Bergen M, Jehmlich N (2016): Proteomic dataset of the organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 grown on hexachlorobenzene as electron acceptor. In: Data in Brief. Band 22, 7, Seiten 253-256. | Zeitschriftenbeitrag (peer-reviewed) |
| Heinritz SN, Weiss E, Eklund M, Aumiller T, Louis S, Rings A, Messner S, Camarinha-Silva A, Seifert J, Bischoff SC, Mosenthin R (2016): Intestinal microbiota and microbial metabolites are changed in a pig model fed a high-fat/low-fiber or a low-fat/high-fiber diet. In: PloS ONE. Band 11(4):e0154329, Seiten 21 S. | Zeitschriftenbeitrag (peer-reviewed) |
| Serrano-Villar S, Rojo D, Martínez-Martínez M, Deusch S, Vázquez-Castellanos JF, Bargiela R, Sainz T, Vera M, Moreno S, Estrada V, Gosalbes MJ, Latorre A, Seifert J, Barbas C, Moya A, Ferrer M (2016): Gut bacteria metabolism impacts immune recovery in HIV-infected individuals. In: eBioMedicine. Band 8, Seiten 203-216. | Zeitschriftenbeitrag (peer-reviewed) |
| Serrano-Villar S, Rojo D, Martínez-Martínez M, Deusch S, Vázquez-Castellanos JF, Sainz T, Vera M, Moreno S, Estrada V, Gosalbes MJ, Latorre A, Seifert J, Barbas C, Moya A, Ferrer M (2016): HIV infection results in metabolic alterations in the gut microbiota different than those induced by other diseases. In: Scientific Reports. Band 6, Seiten 26192. | Zeitschriftenbeitrag (peer-reviewed) |
| Tilocca B, Witzig M, Rodehutscord M, Seifert J (2016): Variations of Phosphorous Accessibility Causing Changes in Microbiome Functions in the Gastrointestinal Tract of Chickens. In: PlosOne. Band 11(10), Seiten e0164735. | Zeitschriftenbeitrag (peer-reviewed) |
| Heyer CME, Schmucker S, Aumiller T, Föll A, Uken K, Rodehutscord M, Hoelzle LE, Seifert J, Stefanski V, Mosenthin R, Eklund M, and Weiss E. (2016): The impact of dietary phosphorus and calcium on the intestinal microbiota and mitogen-induced proliferation of mesenteric lymph node lymphocytes in pigs. In: Journal of Animal Science. Band 94 - Suppl. 3, Seiten 373-376. | Zeitschriftenbeitrag (peer-reviewed) |
| Seifert J (2016): Gesunde Tiere durch die „richtigen Mikroorganismen”. In: BLE. Schriftenreihe Agrobiodiversität. Band 99, Seiten 120-128. | Buchbeitrag |
| Deusch S, Tilocca B, Camarinha-Silva A, Seifert J (2015): News in livestock research — use of Omics-technologies to study the microbiota in the gastrointestinal tract of farm animals. In: Computational and Structural Biotechnology Journal. Band 13, Seiten 55-63. | Zeitschriftenbeitrag (peer-reviewed) |
| Pöritz M, Schiffmann CL, Hause G, Heinemann U, Seifert J, Jehmlich N, von Bergen M, Nijenhuis I, Lechner U (2015): Dehalococcoides mccartyi strain DCMB5 respires a broad spectrum of chlorinated aromatic compounds. In: Applied and Environmental Microbiology. Band 81, 2, Seiten 587-596. | Zeitschriftenbeitrag (peer-reviewed) |
| Sachsenberg T, Herbst FA, Taubert M, Kermer R, Jehmlich N, von Bergen M, Seifert J, Kohlbacher O. (2015): MetaProSIP: Automated Inference of Stable Isotope Incorporation Rates in Proteins for Functional Metaproteomics. In: Journal of Proteome Research. Band 14, 2, Seiten 619-627. | Zeitschriftenbeitrag (peer-reviewed) |
| Deusch S., Seifert, J. (2015): Catching the tip of the iceberg - evaluation of sample preparation protocols for metaproteomic studies of the rumen microbiota. In: Proteomics. Band 15, 20, Seiten 3590-3595. | Zeitschriftenbeitrag (peer-reviewed) |
| Kümmel S, Herbst F-A, Bahr A, Duarte M, Pieper DH, Jehmlich N, Seifert J, von Bergen M, Bombach P, Richnow HH and Vogt C. (2015): Anaerobic naphthalene degradation by sulfate-reducing Desulfobacteraceae from various anoxic aquifers. In: FEMS Microbiology Ecology. Band 91, Seiten Advance access. | Zeitschriftenbeitrag (peer-reviewed) |
| Tobalina L, Bargiela R, Pey J, Herbst FA, Lores I, Rojo D, Barbas C, Peláez AI, Sánchez J, von Bergen M, Seifert J, Ferrer M, Planes FJ (2015): Context-specific metabolic network reconstruction of a naphthalene degrading bacterial community guided by metaproteomic data. In: Bioinformatics. Band 31, Seiten 1771-1779. | Zeitschriftenbeitrag (peer-reviewed) |
| Witzig M, Boguhn J, Zeder M, Seifert J and Rodehutscord M. (2015): Effect of donor animal species and their feeding on the composition of the microbial community establishing in a rumen simulation. In: Journal of Applied Microbiology. Band 119, Seiten 33-46. | Zeitschriftenbeitrag (peer-reviewed) |
| Bargiela R, Herbst FA, Martínez-Martínez M, Seifert J, Rojo D, Cappello S, Genovese M, Crisafi F, Denaro R, Chernikova TN, Barbas C, von Bergen M, Yakimov MM, Ferrer M, Golyshin PN (2015): Metaproteomics and metabolomics analyses of three chronically petroleum-polluted sites reveal the importance of general anaerobic processes uncoupled with degradation. In: Proteomics. Band 15, 20, Seiten 3508-3520. | Zeitschriftenbeitrag (peer-reviewed) |
| Goris T, Schiffmann CL, Gadkari J, Schubert T, Seifert J, Jehmlich N, von Bergen M, Diekert G (2015): Proteomics of the organohalide-respiring epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates. In: Scientific Reports. Band 5, Seiten 13794. | Zeitschriftenbeitrag (peer-reviewed) |
| Witzig M, Camarinha da Silva A, Green-Engert R, Hoelzle K, Zeller E, Seifert J, Hoelzle LE and Rodehutscord M (2015): Spatial variation of the gut microbiota in Broiler chickens as affected by dietary available phosphorus and assessed by T-RFLP analysis and 454 pyrosequencing. In: PLOS ONE. Band 10, 11, Seite 18 | Zeitschriftenbeitrag (peer-reviewed) |
| Bozinovski D, Taubert M, Kleinsteuber S, Richnow H-H, von Bergen M, Vogt C, Seifert J (2014): Metaproteogenomic analysis of a sulfate-reducing enrichment culture reveals genomic organization of key enzymes in the m-xylene degradation pathway and metabolic activity of proteobacteria. In: Systematic and Applied Microbiology. Band 37, Seiten 488-501. | Zeitschriftenbeitrag (peer-reviewed) |
| Lieder S, Jahn M, Seifert J, von Bergen M, Müller S and Takors R (2014): Subpopulation-proteomics reveal growth rate, but not cell cycling, as a major impact on protein composition in Pseudomonas putida KT2440. In: AMB Express. Band 4:71, Seiten 10. | Zeitschriftenbeitrag (peer-reviewed) |
| Marozava S, Röling WFM, Seifert J, Küffner R, von Bergen M and Meckenstock RU (2014): Physiology of Geobacter metallireducens under excess and limitation of electron donors. Part I. Batch cultivation with excess of carbon sources. In: Systematic and Applied Microbiology. Band 37, , Seiten 277-286. | Zeitschriftenbeitrag (peer-reviewed) |
| Marozava S, Röling WFM, Seifert J, Küffner R, von Bergen M and Meckenstock RU. (2014): Physiology of Geobacter metallireducens under excess and limitation of electron donors. Part II. Mimicking environmental conditions during cultivation in retentostats. In: Systematic and Applied Microbiology. Band 37, Seiten 287-295. | Zeitschriftenbeitrag (peer-reviewed) |
| Schiffmann CL, Jehmlich N, Otto W, Hansen R, Halkjær Nielsen P, Adrian L, Seifert J and von Bergen M. (2014): Proteome profile and proteogenomics of the organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1 grown on hexachlorobenzene as electron acceptor. In: Journal of Proteomics. Band 98, Seiten 59-64. | Zeitschriftenbeitrag (peer-reviewed) |
| Schiffmann C, Hansen R, Baumann S, Kublik A, Halkjær Nielsen P, Adrian L, von Bergen M, Jehmlich N and Seifert J. (2014): Comparison of targeted peptide quantification assays for reductive dehalogenases by selective reaction monitoring (SRM) and precursor reaction monitoring (PRM). In: Analytical and Bioanalytical Chemistry. Band 406, Seiten 283-291. | Zeitschriftenbeitrag (peer-reviewed) |